Combat

Aura
Aimbot
FightBot
ForceField
AimAssist
FastBow
AntiKnockback/Velocity
Reach
Criticals
AutoClicker
Back Track

Movement

Flight
Glide
FastFall
Speed
All Jumps
Clip
Teleport
NoFall
Spider/WallClimb
Jesus/WaterWalk
FastLadder/FastClimb
Timer
Blink
Step
Derp/NoHead
FastEat
Food Sprint
Ground Spoof
Movement Spoof
Elytra (Very basic)
Entity (Very basic)

World

FastPlace
BlockReach
Liquids
Scaffold
Tower
X-Ray (Statistics-based)
GhostHand
FastBreak/Nuker (1.13+ Servers)
BedF@cker

Miscellaneous

FastEat
Regen/FastHeal
NoSwing/NoAnimation
AutoRespawn
InventoryMove
AutoLoot
PortalInventory
ExtraInventory

Command Arguments
<> Required command argument
[] Optional command argument
You can hover above commands in-game to get additional descriptions about their functionality.

Command List

/spartan panic enables silent mode and disables punishments for all checks.
Permissions: spartan.manage

/spartan reload reloads spartan's configuration.
Permission: spartan.reload

/spartan notifications [ticks-frequency] toggles the notification system.
Permission: spartan.notifications

/spartan  info [player] opens a GUI menu with a player's violations info.
Permission: spartan.info

/spartan kick kicks a player and broadcasts a message.
Permission: spartan.kick

/spartan  toggle toggles a certain check.
Permission: spartan.manage

/spartan toggle-prevention toggles a certain check's preventions by making it silent.
Permission: spartan.manage

/spartan toggle-punishment toggles a certain check's punishments.
Permission: spartan.manage

/spartan bypass allows a player to bypass a check for a certain amount of time.
Permission: spartan.use_bypass

/spartan warn warns a player with a reason.
Permission: spartan.warn

/spartan wave [player] [command] allows you to interact with the wave punishment system.
Permission: spartan.wave

May not always work
/spartan proxy-command sends a command to the proxy/network of servers. (Example: BungeeCord)
Permission: spartan.admin, spartan.*

/spartan if equals do executes a conditional command.
/spartan if contains do executes a conditional command.
/spartan if is-less-than do executes a conditional command.
/spartan if is-greater-than do executes a conditional command.
Permission: spartan.condition

Additional Permissions

spartan.bypass allows you to bypass all checks. (USE THE settings.yml op_bypass OPTION WHEN OP)
spartan.bypass.(check) allows you to bypass a certain check.
spartan.admin, spartan.* gives you all permissions except the bypass ones. (BE CAREFUL WHEN OP)
spartan.bedrock considers a player as a Bedrock client instead of Java client. (BE CAREFUL WHEN OP)
spartan.punishment allows you to bypass the configured punishments of all checks.

Hovering Above Commands

Spartan supports interactive commands. When you hover above a command, Spartan will create a small hovering box that explains in text what the command does and examples of how you can use it.

Pressing TAB

Spartan supports command auto-complete. To trigger it, type /spartan and press the button TAB on your keyboard. This functionality takes part as a list of recommendations to save you time.

Permissions that judge Staff Rank / Ranks

spartan.admin
spartan.*
spartan.info
spartan.manage
spartan.reload
spartan.notifications
spartan.kick
spartan.use_bypass
spartan.warn
spartan.wave
spartan.condition

Command Proxy-Transfer Plugins (BungeeCord, Velocity, WaterFall)

https://www.spigotmc.org/resources/27580/
https://www.spigotmc.org/resources/52093/